docs/dyn/genomics_v1.referencesets.html - platform/external/python/google-api-python-client - Git at Google

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 <h1><a href="genomics_v1.html">Genomics API</a> . <a href="genomics_v1.referencesets.html">referencesets</a></h1>
 <h2>Instance Methods</h2>
 <p class="toc_element">
   <code><a href="#get">get(referenceSetId, x__xgafv=None)</a></code></p>
 <p class="firstline">Gets a reference set.</p>
 <p class="toc_element">
   <code><a href="#search">search(body, x__xgafv=None)</a></code></p>
 <p class="firstline">Searches for reference sets which match the given criteria.</p>
 <p class="toc_element">
   <code><a href="#search_next">search_next(previous_request, previous_response)</a></code></p>
 <p class="firstline">Retrieves the next page of results.</p>
 <h3>Method Details</h3>
 <div class="method">
     <code class="details" id="get">get(referenceSetId, x__xgafv=None)</code>
   <pre>Gets a reference set.

 For the definitions of references and other genomics resources, see
 [Fundamentals of Google
 Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

 Implements
 [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).

 Args:
   referenceSetId: string, The ID of the reference set. (required)
   x__xgafv: string, V1 error format.
     Allowed values
       1 - v1 error format
       2 - v2 error format

 Returns:
   An object of the form:

     { # A reference set is a set of references which typically comprise a reference
       # assembly for a species, such as `GRCh38` which is representative
       # of the human genome. A reference set defines a common coordinate space for
       # comparing reference-aligned experimental data. A reference set contains 1 or
       # more references.
       #
       # For more genomics resource definitions, see [Fundamentals of Google
       # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
     "description": "A String", # Free text description of this reference set.
     "sourceUri": "A String", # The URI from which the references were obtained.
     "referenceIds": [ # The IDs of the reference objects that are part of this set.
         # `Reference.md5checksum` must be unique within this set.
       "A String",
     ],
     "assemblyId": "A String", # Public id of this reference set, such as `GRCh37`.
     "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
         # with a version number, for example `NC_000001.11`.
       "A String",
     ],
     "md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The
         # checksum is computed by sorting all lower case hexidecimal string
         # `reference.md5checksum` (for all reference in this set) in
         # ascending lexicographic order, concatenating, and taking the MD5 of that
         # value. The resulting value is represented in lower case hexadecimal format.
     "id": "A String", # The server-generated reference set ID, unique across all reference sets.
     "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
         # indicating the species which this reference set is intended to model. Note
         # that contained references may specify a different `ncbiTaxonId`, as
         # assemblies may contain reference sequences which do not belong to the
         # modeled species, for example EBV in a human reference genome.
   }</pre>
 </div>

 <div class="method">
     <code class="details" id="search">search(body, x__xgafv=None)</code>
   <pre>Searches for reference sets which match the given criteria.

 For the definitions of references and other genomics resources, see
 [Fundamentals of Google
 Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

 Implements
 [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)

 Args:
   body: object, The request body. (required)
     The object takes the form of:

 {
     "md5checksums": [ # If present, return reference sets for which the
         # md5checksum matches exactly.
       "A String",
     ],
     "pageToken": "A String", # The continuation token, which is used to page through large result sets.
         # To get the next page of results, set this parameter to the value of
         # `nextPageToken` from the previous response.
     "accessions": [ # If present, return reference sets for which a prefix of any of
         # sourceAccessions
         # match any of these strings. Accession numbers typically have a main number
         # and a version, for example `NC_000001.11`.
       "A String",
     ],
     "pageSize": 42, # The maximum number of results to return in a single page. If unspecified,
         # defaults to 1024. The maximum value is 4096.
     "assemblyId": "A String", # If present, return reference sets for which a substring of their
         # `assemblyId` matches this string (case insensitive).
   }

   x__xgafv: string, V1 error format.
     Allowed values
       1 - v1 error format
       2 - v2 error format

 Returns:
   An object of the form:

     {
     "nextPageToken": "A String", # The continuation token, which is used to page through large result sets.
         # Provide this value in a subsequent request to return the next page of
         # results. This field will be empty if there aren't any additional results.
     "referenceSets": [ # The matching references sets.
       { # A reference set is a set of references which typically comprise a reference
           # assembly for a species, such as `GRCh38` which is representative
           # of the human genome. A reference set defines a common coordinate space for
           # comparing reference-aligned experimental data. A reference set contains 1 or
           # more references.
           #
           # For more genomics resource definitions, see [Fundamentals of Google
           # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
         "description": "A String", # Free text description of this reference set.
         "sourceUri": "A String", # The URI from which the references were obtained.
         "referenceIds": [ # The IDs of the reference objects that are part of this set.
             # `Reference.md5checksum` must be unique within this set.
           "A String",
         ],
         "assemblyId": "A String", # Public id of this reference set, such as `GRCh37`.
         "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
             # with a version number, for example `NC_000001.11`.
           "A String",
         ],
         "md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The
             # checksum is computed by sorting all lower case hexidecimal string
             # `reference.md5checksum` (for all reference in this set) in
             # ascending lexicographic order, concatenating, and taking the MD5 of that
             # value. The resulting value is represented in lower case hexadecimal format.
         "id": "A String", # The server-generated reference set ID, unique across all reference sets.
         "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
             # indicating the species which this reference set is intended to model. Note
             # that contained references may specify a different `ncbiTaxonId`, as
             # assemblies may contain reference sequences which do not belong to the
             # modeled species, for example EBV in a human reference genome.
       },
     ],
   }</pre>
 </div>

 <div class="method">
     <code class="details" id="search_next">search_next(previous_request, previous_response)</code>
   <pre>Retrieves the next page of results.

 Args:
   previous_request: The request for the previous page. (required)
   previous_response: The response from the request for the previous page. (required)

 Returns:
   A request object that you can call 'execute()' on to request the next
   page. Returns None if there are no more items in the collection.
     </pre>
 </div>

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	<h1><a href="genomics_v1.html">Genomics API</a> . <a href="genomics_v1.referencesets.html">referencesets</a></h1>
	<h2>Instance Methods</h2>
	<p class="toc_element">
	<code><a href="#get">get(referenceSetId, x__xgafv=None)</a></code></p>
	<p class="firstline">Gets a reference set.</p>
	<p class="toc_element">
	<code><a href="#search">search(body, x__xgafv=None)</a></code></p>
	<p class="firstline">Searches for reference sets which match the given criteria.</p>
	<p class="toc_element">
	<code><a href="#search_next">search_next(previous_request, previous_response)</a></code></p>
	<p class="firstline">Retrieves the next page of results.</p>
	<h3>Method Details</h3>
	<div class="method">
	<code class="details" id="get">get(referenceSetId, x__xgafv=None)</code>
	<pre>Gets a reference set.

	For the definitions of references and other genomics resources, see
	[Fundamentals of Google
	Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

	Implements
	[GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).

	Args:
	referenceSetId: string, The ID of the reference set. (required)
	x__xgafv: string, V1 error format.
	Allowed values
	1 - v1 error format
	2 - v2 error format

	Returns:
	An object of the form:

	{ # A reference set is a set of references which typically comprise a reference
	# assembly for a species, such as `GRCh38` which is representative
	# of the human genome. A reference set defines a common coordinate space for
	# comparing reference-aligned experimental data. A reference set contains 1 or
	# more references.
	#
	# For more genomics resource definitions, see [Fundamentals of Google
	# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	"description": "A String", # Free text description of this reference set.
	"sourceUri": "A String", # The URI from which the references were obtained.
	"referenceIds": [ # The IDs of the reference objects that are part of this set.
	# `Reference.md5checksum` must be unique within this set.
	"A String",
	],
	"assemblyId": "A String", # Public id of this reference set, such as `GRCh37`.
	"sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
	# with a version number, for example `NC_000001.11`.
	"A String",
	],
	"md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The
	# checksum is computed by sorting all lower case hexidecimal string
	# `reference.md5checksum` (for all reference in this set) in
	# ascending lexicographic order, concatenating, and taking the MD5 of that
	# value. The resulting value is represented in lower case hexadecimal format.
	"id": "A String", # The server-generated reference set ID, unique across all reference sets.
	"ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
	# indicating the species which this reference set is intended to model. Note
	# that contained references may specify a different `ncbiTaxonId`, as
	# assemblies may contain reference sequences which do not belong to the
	# modeled species, for example EBV in a human reference genome.
	}</pre>
	</div>

	<div class="method">
	<code class="details" id="search">search(body, x__xgafv=None)</code>
	<pre>Searches for reference sets which match the given criteria.

	For the definitions of references and other genomics resources, see
	[Fundamentals of Google
	Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

	Implements
	[GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)

	Args:
	body: object, The request body. (required)
	The object takes the form of:

	{
	"md5checksums": [ # If present, return reference sets for which the
	# md5checksum matches exactly.
	"A String",
	],
	"pageToken": "A String", # The continuation token, which is used to page through large result sets.
	# To get the next page of results, set this parameter to the value of
	# `nextPageToken` from the previous response.
	"accessions": [ # If present, return reference sets for which a prefix of any of
	# sourceAccessions
	# match any of these strings. Accession numbers typically have a main number
	# and a version, for example `NC_000001.11`.
	"A String",
	],
	"pageSize": 42, # The maximum number of results to return in a single page. If unspecified,
	# defaults to 1024. The maximum value is 4096.
	"assemblyId": "A String", # If present, return reference sets for which a substring of their
	# `assemblyId` matches this string (case insensitive).
	}

	x__xgafv: string, V1 error format.
	Allowed values
	1 - v1 error format
	2 - v2 error format

	Returns:
	An object of the form:

	{
	"nextPageToken": "A String", # The continuation token, which is used to page through large result sets.
	# Provide this value in a subsequent request to return the next page of
	# results. This field will be empty if there aren't any additional results.
	"referenceSets": [ # The matching references sets.
	{ # A reference set is a set of references which typically comprise a reference
	# assembly for a species, such as `GRCh38` which is representative
	# of the human genome. A reference set defines a common coordinate space for
	# comparing reference-aligned experimental data. A reference set contains 1 or
	# more references.
	#
	# For more genomics resource definitions, see [Fundamentals of Google
	# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
	"description": "A String", # Free text description of this reference set.
	"sourceUri": "A String", # The URI from which the references were obtained.
	"referenceIds": [ # The IDs of the reference objects that are part of this set.
	# `Reference.md5checksum` must be unique within this set.
	"A String",
	],
	"assemblyId": "A String", # Public id of this reference set, such as `GRCh37`.
	"sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
	# with a version number, for example `NC_000001.11`.
	"A String",
	],
	"md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The
	# checksum is computed by sorting all lower case hexidecimal string
	# `reference.md5checksum` (for all reference in this set) in
	# ascending lexicographic order, concatenating, and taking the MD5 of that
	# value. The resulting value is represented in lower case hexadecimal format.
	"id": "A String", # The server-generated reference set ID, unique across all reference sets.
	"ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
	# indicating the species which this reference set is intended to model. Note
	# that contained references may specify a different `ncbiTaxonId`, as
	# assemblies may contain reference sequences which do not belong to the
	# modeled species, for example EBV in a human reference genome.
	},
	],
	}</pre>
	</div>

	<div class="method">
	<code class="details" id="search_next">search_next(previous_request, previous_response)</code>
	<pre>Retrieves the next page of results.

	Args:
	previous_request: The request for the previous page. (required)
	previous_response: The response from the request for the previous page. (required)

	Returns:
	A request object that you can call 'execute()' on to request the next
	page. Returns None if there are no more items in the collection.
	</pre>
	</div>

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