| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| PERL_EXPORT_PHASE_FUNCTIONS=no |
| |
| inherit eutils perl-module toolchain-funcs |
| |
| DESCRIPTION="tRNA detection in large-scale genome sequences" |
| HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/" |
| SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| KEYWORDS="~amd64 ~x86" |
| IUSE="" |
| |
| S="${WORKDIR}"/tRNAscan-SE-1.3.1/ |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${P}-ldflags.patch |
| sed \ |
| -e "s:BINDIR = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \ |
| -e "s:LIBDIR = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \ |
| -e "s:MANDIR = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \ |
| -e "s:CC = gcc:CC = $(tc-getCC):" \ |
| -e "s:CFLAGS = -O:CFLAGS = ${CFLAGS}:" \ |
| -i Makefile || die |
| |
| perl_set_version |
| } |
| |
| src_test() { |
| emake PATH="${S}:${PATH}" testrun |
| } |
| |
| src_install() { |
| dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 |
| |
| newman tRNAscan-SE.man tRNAscan-SE.man.1 |
| |
| dodoc MANUAL README Release.history |
| |
| insinto /usr/share/${PN}/ |
| doins *.cm gcode.* Dsignal TPCsignal |
| |
| dodoc Manual.ps |
| |
| insinto ${VENDOR_LIB} |
| doins -r tRNAscanSE |
| } |