| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils toolchain-funcs |
| |
| MY_P="${PN}_v${PV/./_}" |
| |
| DESCRIPTION="Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences" |
| HOMEPAGE="http://probcons.stanford.edu/" |
| SRC_URI="http://probcons.stanford.edu/${MY_P}.tar.gz" |
| |
| LICENSE="public-domain" |
| SLOT="0" |
| KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" |
| IUSE="" |
| |
| # Gnuplot is explicitly runtime-only, it's run using system() |
| RDEPEND=" |
| !sci-geosciences/gmt |
| sci-visualization/gnuplot" |
| DEPEND="" |
| |
| S="${WORKDIR}/${PN}" |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${P}-cxxflags.patch \ |
| "${FILESDIR}"/gcc-4.3.patch \ |
| "${FILESDIR}"/${P}-gcc-4.6.patch |
| } |
| |
| src_compile() { |
| emake \ |
| CXX="$(tc-getCXX)" \ |
| OPT_CXXFLAGS="${CXXFLAGS}" |
| } |
| |
| src_install() { |
| dobin probcons project makegnuplot |
| # Overlap with imagemagick |
| newbin compare compare-probcons |
| dodoc README |
| } |
| |
| pkg_postinst() { |
| ewarn "The 'compare' binary is installed as 'compare-probcons'" |
| ewarn "to avoid overlap with other packages." |
| einfo "You may also want to download the user manual" |
| einfo "from http://probcons.stanford.edu/manual.pdf" |
| } |
