| <?xml version="1.0" encoding="UTF-8"?> |
| <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| <pkgmetadata> |
| <herd>sci-chemistry</herd> |
| <maintainer> |
| <email>jlec@gentoo.org</email> |
| </maintainer> |
| <longdescription> |
| Suitename is a new C program that supports the ROC RNA Ontology Consortium |
| consensus RNA backbone nomenclature and conformer-list development (see our RNA |
| backbone rotamer section. |
| From dihedral-angle input for a specific RNA structure (usually from Dangle), |
| Suitename categorizes the RNA backbone geometry of each suite (the |
| sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging |
| to one of the 53 defined conformer bins. The output is either a |
| one-line-per-suite report, or a linear conformer string (as shown below the |
| image here) in one of several variant formats. Suitename is built into |
| MolProbity, producing entries in the multi-criterion chart for an RNA model and |
| also a suitestring file. The Suitename code is made available here for bulk or |
| individual command-line use. |
| </longdescription> |
| </pkgmetadata> |