| # Copyright 1999-2014 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| inherit eutils fortran-2 flag-o-matic toolchain-funcs versionator |
| |
| DESCRIPTION="Macromolecular crystallographic refinement program" |
| HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac" |
| SRC_URI=" |
| ${HOMEPAGE}/data/refmac_stable/refmac_${PV}.tar.gz |
| test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" |
| |
| SLOT="0" |
| LICENSE="ccp4" |
| KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" |
| IUSE="test" |
| |
| RDEPEND=" |
| sci-chemistry/makecif |
| >=sci-libs/ccp4-libs-6.1.3-r7 |
| sci-libs/mmdb |
| <sci-libs/monomer-db-1 |
| virtual/blas |
| virtual/lapack" |
| DEPEND="${RDEPEND} |
| virtual/pkgconfig" |
| |
| FORTRAN_STANDARD="77 90" |
| |
| S="${WORKDIR}" |
| |
| PATCHES=( |
| "${FILESDIR}"/${PV}-allow-dynamic-linking.patch |
| "${FILESDIR}"/${PV}-gcc4.6.patch |
| ) |
| |
| src_prepare() { |
| epatch ${PATCHES[@]} |
| |
| use test && epatch "${FILESDIR}"/$(get_version_component_range 1-2 ${PV})-test.log.patch |
| [[ ${FC} == *gfortran* ]] && \ |
| append-fflags -fno-second-underscore && \ |
| append-cflags -DGFORTRAN -DPROTOTYPE && \ |
| append-libs -lgfortran -lgfortranbegin -lstdc++ |
| [[ ${FC} == *ifort* ]] && \ |
| append-libs -lstdc++ |
| } |
| |
| src_compile() { |
| emake \ |
| FC=$(tc-getFC) \ |
| CC=$(tc-getCC) \ |
| CXX=$(tc-getCXX) \ |
| COPTIM="${CFLAGS}" \ |
| FOPTIM="${FFLAGS:- -O2}" \ |
| VERSION="" \ |
| XFFLAGS="" \ |
| XCFLAGS="" \ |
| LLIBCCP="-lccp4f -lccp4c -lccif $($(tc-getPKG_CONFIG) --libs mmdb)" \ |
| LLIBLAPACK="$($(tc-getPKG_CONFIG) --libs lapack blas)" \ |
| LLIBOTHERS="${LIBS}" \ |
| ${PN} libcheck |
| } |
| |
| src_test() { |
| einfo "Starting tests ..." |
| source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" |
| export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" |
| export CCP4_TEST="${WORKDIR}"/test-framework |
| export CCP4_SCR="${T}" |
| ln -sf refmac "${S}"/refmac5 |
| sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb |
| ccp4-run-thorough-tests -v test_refmac5 || die |
| } |
| |
| src_install() { |
| exeinto /usr/libexec/ccp4/bin/ |
| doexe ${PN} |
| dosym refmac /usr/libexec/ccp4/bin/refmac5 |
| dosym ../libexec/ccp4/bin/${PN} /usr/bin/${PN} |
| dosym refmac /usr/bin/refmac5 |
| dodoc refmac_keywords.pdf bugs_and_features.pdf |
| } |
