| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| DESCRIPTION="Codon usage tables calculated from GenBank" |
| HOMEPAGE="http://www.kazusa.or.jp/codon/" |
| SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" |
| |
| SLOT="0" |
| LICENSE="public-domain" |
| # Minimal build keeps only the indexed files (if applicable) and the |
| # documentation. The non-indexed database is not installed. |
| IUSE="emboss minimal" |
| KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" |
| |
| DEPEND="emboss? ( sci-biology/emboss )" |
| RDEPEND="${DEPEND}" |
| |
| RESTRICT="binchecks strip" |
| |
| src_compile() { |
| if use emboss; then |
| mkdir CODONS || die |
| ebegin "Indexing CUTG for usage with EMBOSS." |
| EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \ |
| "Indexing CUTG failed." |
| eend |
| fi |
| } |
| |
| src_install() { |
| local file |
| dodoc README CODON_LABEL SPSUM_LABEL |
| if ! use minimal; then |
| dodir /usr/share/${PN} |
| mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \ |
| "Installing raw CUTG database failed." |
| fi |
| |
| if use emboss; then |
| dodir /usr/share/EMBOSS/data/CODONS |
| cd CODONS || die |
| for file in *; do |
| mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \ |
| "Installing the EMBOSS-indexed database failed." |
| done |
| fi |
| } |