| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| PYTHON_COMPAT=( python2_7 ) |
| PYTHON_REQ_USE="ssl,tk" |
| |
| inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator |
| |
| #PATCHSET="${PV##*_p}" |
| MY_PN="${PN}mr" |
| MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})" |
| MY_MAJOR="$(get_version_component_range 1-3)" |
| |
| DESCRIPTION="The Collaborative Computing Project for NMR" |
| HOMEPAGE="http://www.ccpn.ac.uk/ccpn" |
| SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz" |
| [[ -n ${PATCHSET} ]] \ |
| && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" |
| |
| SLOT="0" |
| LICENSE="|| ( CCPN LGPL-2.1 )" |
| KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
| IUSE="+opengl" |
| |
| REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
| |
| RDEPEND=" |
| ${PYTHON_DEPS} |
| dev-lang/tk:0=[threads] |
| dev-python/numpy[${PYTHON_USEDEP}] |
| dev-tcltk/tix |
| =sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}] |
| sci-biology/psipred |
| x11-libs/libXext |
| x11-libs/libX11 |
| opengl? ( |
| media-libs/freeglut |
| dev-python/pyglet[${PYTHON_USEDEP}] |
| )" |
| DEPEND="${RDEPEND}" |
| |
| RESTRICT="mirror" |
| |
| S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2) |
| |
| src_prepare() { |
| [[ -n ${PATCHSET} ]] && \ |
| EPATCH_OPTS="-p2" epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch |
| |
| epatch "${FILESDIR}"/2.3.1-parallel.patch |
| |
| append-lfs-flags |
| |
| sed \ |
| -e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \ |
| -e "s:weights_s:weights:g" \ |
| -i python/ccpnmr/analysis/wrappers/Psipred.py || die |
| |
| local tk_ver |
| local myconf |
| |
| tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)" |
| |
| if use opengl; then |
| GLUT_NEED_INIT="-DNEED_GLUT_INIT" |
| IGNORE_GL_FLAG="" |
| GL_FLAG="-DUSE_GL_TRUE" |
| GL_DIR="${EPREFIX}/usr" |
| GL_LIB="-lglut -lGLU -lGL" |
| GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include" |
| GL_LIB_FLAGS="" |
| else |
| IGNORE_GL_FLAG="-DIGNORE_GL" |
| GL_FLAG="-DUSE_GL_FALSE" |
| fi |
| |
| GLUT_NOT_IN_GL="" |
| GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)" |
| |
| rm -rf data model doc license || die |
| |
| sed \ |
| -e "s|/usr|${EPREFIX}/usr|g" \ |
| -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \ |
| -e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \ |
| -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \ |
| -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \ |
| -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \ |
| -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \ |
| -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \ |
| -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \ |
| -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \ |
| -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \ |
| -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \ |
| -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \ |
| -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \ |
| -e "s|^\(TK_LIB =\).*|\1 -ltk|g" \ |
| -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \ |
| -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \ |
| -e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \ |
| c/environment_default.txt > c/environment.txt || die |
| |
| sed \ |
| -e 's:ln -s:cp -f:g' \ |
| -i $(find python -name linkSharedObjs) || die |
| } |
| |
| src_compile() { |
| emake -C c all |
| emake -C c links |
| } |
| |
| src_install() { |
| local libdir |
| local tkver |
| local _wrapper |
| |
| find . -name "*.pyc" -type f -delete || die |
| |
| libdir=$(get_libdir) |
| tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) |
| |
| _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr" |
| for wrapper in ${_wrapper}; do |
| sed \ |
| -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \ |
| -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \ |
| -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \ |
| -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \ |
| -e "s|gentoopython|${EPYTHON}|g" \ |
| -e "s|gentoousr|${EPREFIX}/usr|g" \ |
| -e "s|//|/|g" \ |
| "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}" |
| dobin "${T}"/${wrapper} |
| done |
| |
| local in_path=$(python_get_sitedir)/${PN} |
| local files |
| local pydocs |
| |
| pydocs="$(find python -name doc -type d)" |
| rm -rf ${pydocs} || die |
| |
| for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do |
| sed \ |
| -e 's|#from __future__|from __future__|g' \ |
| -i ${i} || die |
| done |
| |
| dodir ${in_path#${EPREFIX}}/c |
| |
| ebegin "Installing main files" |
| python_moduleinto ${PN} |
| python_domodule python |
| eend |
| |
| ebegin "Adjusting permissions" |
| for _file in $(find "${ED}" -type f -name "*so"); do |
| chmod 755 ${_file} |
| done |
| eend |
| python_optimize |
| } |