| # Copyright 1999-2009 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| inherit eutils |
| |
| MY_P="MUMmer${PV}" |
| DESCRIPTION="A rapid whole genome aligner" |
| HOMEPAGE="http://mummer.sourceforge.net/" |
| SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz" |
| |
| LICENSE="Artistic" |
| SLOT="0" |
| IUSE="doc" |
| KEYWORDS="amd64 x86" |
| |
| DEPEND="" |
| RDEPEND="app-shells/tcsh" |
| |
| S="${WORKDIR}/${MY_P}" |
| |
| src_unpack() { |
| unpack ${A} |
| cd "${S}" |
| epatch "${FILESDIR}"/${P}-gcc43.patch |
| # Warning: package uses CPPFLAGS on c in addition to cpp, despite the name |
| sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ |
| -e 's/LDFLAGS =$//' "${S}/Makefile" |
| } |
| |
| src_compile() { |
| emake || die "emake failed" |
| |
| sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| -e 's|\(set bindir = \).*|\1/usr/bin|' \ |
| -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ |
| -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths" |
| sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh |
| } |
| |
| src_install() { |
| dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \ |
| exact-tandems promer repeat-match show-aligns gaps mummer \ |
| show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* || die |
| newbin annotate mummer-annotate || die |
| |
| insinto /usr/share/${PN}/scripts |
| doins scripts/{*.awk,*.csh,*.pl} |
| insinto /usr/share/${PN}/lib |
| doins scripts/Foundation.pm || die |
| |
| dodoc ACKNOWLEDGEMENTS ChangeLog README |
| insinto /usr/share/doc/${PF} |
| use doc && doins -r docs |
| } |