| # Copyright 1999-2014 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| inherit eutils toolchain-funcs |
| |
| MY_P=GlimmerHMM |
| |
| DESCRIPTION="A eukaryotic gene finding system from TIGR" |
| HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/" |
| SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz" |
| |
| LICENSE="Artistic" |
| SLOT="0" |
| IUSE="" |
| KEYWORDS="amd64 x86" |
| |
| src_unpack() { |
| unpack ${A} |
| mv GlimmerHMM ${P} |
| } |
| |
| src_prepare() { |
| sed \ |
| -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/libexec/'${PN}'/training_utils"|' \ |
| -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \ |
| -i "${S}/train/trainGlimmerHMM" || die |
| |
| epatch "${FILESDIR}"/${PV}-gentoo.patch |
| tc-export CC CXX |
| } |
| |
| src_compile() { |
| emake -C "${S}/sources" |
| emake -C "${S}/train" |
| } |
| |
| src_install() { |
| dobin sources/glimmerhmm train/trainGlimmerHMM |
| |
| insinto /usr/share/${PN}/lib |
| doins train/*.pm |
| insinto /usr/share/${PN}/models |
| doins -r trained_dir/* |
| exeinto /usr/libexec/${PN}/training_utils |
| doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} |
| |
| dodoc README.first train/readme.train |
| } |