| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit autotools eutils flag-o-matic |
| |
| DESCRIPTION="De novo assembly of whole-genome shotgun microreads" |
| HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" |
| SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" |
| |
| LICENSE="MIT" |
| SLOT="0" |
| IUSE="" |
| KEYWORDS="~amd64 -x86" |
| |
| DEPEND=" |
| dev-libs/boost |
| !sci-biology/allpaths |
| sci-biology/vaal" |
| RDEPEND="" |
| |
| src_prepare() { |
| epatch "${FILESDIR}"/${P}-gcc4.9.patch |
| sed -i 's/-ggdb//' configure.ac || die |
| eautoreconf |
| } |
| |
| src_install() { |
| default |
| # Provided by sci-biology/vaal |
| for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do |
| rm "${ED}/usr/bin/$i" || die |
| done |
| } |
