| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| AUTOTOOLS_AUTORECONF=yes |
| |
| inherit autotools-utils |
| |
| DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms" |
| HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/" |
| SRC_URI=" |
| ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz |
| ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc" |
| |
| LICENSE="Whitehead-MIT" |
| SLOT="0" |
| KEYWORDS="amd64" |
| IUSE="openmp" |
| |
| DEPEND=">=dev-libs/boost-1.41.0-r3" |
| RDEPEND="${DEPEND}" |
| |
| DOCS=( "${DISTDIR}/VAAL_manual.doc" ) |
| |
| src_prepare() { |
| sed \ |
| -e '/COPYING/d' \ |
| -i src/Makefile.am || die |
| |
| sed \ |
| -e 's:-ggdb::g' \ |
| -e '/AC_OPENMP_CEHCK/d' \ |
| -i configure.ac || die |
| autotools-utils_src_prepare |
| } |
| |
| src_configure(){ |
| local myeconfargs=( $(use_enable openmp) ) |
| autotools-utils_src_configure |
| } |
