| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils flag-o-matic toolchain-funcs |
| |
| DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees" |
| HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html" |
| SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2" |
| |
| SLOT="0" |
| LICENSE="GPL-2" |
| KEYWORDS="~amd64 ~x86" |
| IUSE="cpu_flags_x86_sse3 +threads" |
| |
| REQUIRED_USE="cpu_flags_x86_sse3" |
| |
| # mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS |
| DEPEND="" # mpi? ( virtual/mpi )" |
| RDEPEND="${DEPEND}" |
| |
| S="${WORKDIR}/RAxML-${PV}" |
| |
| src_prepare() { |
| epatch "${FILESDIR}"/${P}-makefile.patch |
| |
| use cpu_flags_x86_sse3 && append-cflags -D__SIM_SSE3 |
| use threads && \ |
| append-cflags -D_USE_PTHREADS && \ |
| append-ldflags -pthread |
| |
| tc-export CC |
| } |
| |
| src_compile() { |
| emake -f Makefile.gcc |
| } |
| |
| src_install() { |
| dobin raxmlHPC |
| } |
