| # Copyright 1999-2011 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI="2" |
| |
| inherit eutils toolchain-funcs java-pkg-opt-2 java-ant-2 |
| |
| MY_P=${PN}.${PV} |
| |
| DESCRIPTION="Protein multiple-alignment-based sequence annealing" |
| HOMEPAGE="http://bio.math.berkeley.edu/amap/" |
| SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| KEYWORDS="~amd64 ~x86" |
| IUSE="java" |
| |
| RDEPEND="java? ( >=virtual/jre-1.5 )" |
| DEPEND="java? ( >=virtual/jdk-1.5 )" |
| |
| S=${WORKDIR}/${PN}-align |
| |
| src_prepare() { |
| epatch "${FILESDIR}"/${P}-makefile.patch \ |
| "${FILESDIR}"/${P}-includes.patch |
| } |
| |
| src_compile() { |
| emake -C align CXX="$(tc-getCXX)" \ |
| OPT_CXXFLAGS="${CXXFLAGS}" || die "make failed" |
| |
| if use java; then |
| pushd "${S}"/display |
| eant -Ddisplay all || die |
| popd |
| fi |
| } |
| |
| src_install() { |
| dobin align/${PN} || die |
| dodoc align/{README,PROBCONS.README} || die |
| insinto /usr/share/${PN}/examples |
| doins examples/* || die |
| if use java; then |
| java-pkg_newjar "${S}"/display/AmapDisplay.jar amapdisplay.jar |
| java-pkg_dolauncher amapdisplay --jar amapdisplay.jar |
| fi |
| } |
