| # Copyright 1999-2016 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=6 |
| |
| inherit autotools flag-o-matic |
| |
| DESCRIPTION="De novo assembly of whole-genome shotgun microreads" |
| # see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 |
| HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" |
| SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" |
| |
| LICENSE="MIT" |
| SLOT="0" |
| KEYWORDS="~amd64" |
| IUSE="openmp" |
| |
| RDEPEND=" |
| !sci-biology/allpaths |
| !sci-biology/vaal" |
| DEPEND=" |
| ${RDEPEND} |
| dev-libs/boost" |
| |
| PATCHES=( |
| "${FILESDIR}/${P}_fix-buildsystem.patch" |
| "${FILESDIR}/${P}_remove-namespace-std.patch" |
| ) |
| |
| pkg_pretend() { |
| # as of release 44849, GCC 4.7.0 (or higher) is required |
| # seems pre gcc-4.7 users must stay with: |
| # ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz |
| if [[ ${MERGE_TYPE} != binary ]]; then |
| [[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \ |
| die "You need to use gcc >4.7" |
| fi |
| } |
| |
| src_prepare() { |
| default |
| |
| eautoreconf |
| } |
| |
| src_configure() { |
| econf \ |
| $(use_enable openmp) |
| } |
