| # Copyright 1999-2013 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| inherit eutils toolchain-funcs |
| |
| DESCRIPTION="Whole genome association analysis toolset" |
| HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/" |
| SRC_URI="http://pngu.mgh.harvard.edu/~purcell/plink/dist/${P}-src.zip" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| IUSE="lapack -webcheck R" |
| KEYWORDS="amd64 x86" |
| |
| DEPEND=" |
| app-arch/unzip |
| lapack? ( virtual/pkgconfig )" |
| RDEPEND=" |
| sys-libs/zlib |
| lapack? ( virtual/lapack )" |
| |
| S="${WORKDIR}/${P}-src" |
| |
| # Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. |
| # Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${PV}-flags.patch \ |
| "${FILESDIR}"/${P}-gcc47.patch |
| use webcheck || sed -i '/WITH_WEBCHECK =/ s/^/#/' "${S}/Makefile" || die |
| use R || sed -i '/WITH_R_PLUGINS =/ s/^/#/' "${S}/Makefile" || die |
| use lapack || sed -i '/WITH_LAPACK =/ s/^/#/' "${S}/Makefile" || die |
| tc-export PKG_CONFIG |
| } |
| |
| src_compile() { |
| emake \ |
| CXX_UNIX=$(tc-getCXX) |
| } |
| |
| src_install() { |
| newbin plink p-link |
| dodoc README.txt |
| } |
