| # Copyright 1999-2010 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| DESCRIPTION="Sequence analysis using profile hidden Markov models" |
| LICENSE="GPL-2" |
| HOMEPAGE="http://hmmer.janelia.org/" |
| SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz" |
| |
| SLOT="0" |
| IUSE="pvm threads" |
| KEYWORDS="~alpha amd64 ~ia64 ~ppc ppc64 ~sparc x86" |
| |
| DEPEND="pvm? ( sys-cluster/pvm )" |
| |
| src_compile() { |
| econf \ |
| --host=${CHOST} \ |
| --prefix="${D}"/usr \ |
| --exec_prefix="${D}"/usr \ |
| --mandir="${D}"/usr/share/man \ |
| --enable-lfs \ |
| $(use_enable pvm) \ |
| $(use_enable threads) || die |
| emake || die |
| } |
| |
| src_install() { |
| einstall || die |
| |
| cd src |
| dolib libhmmer.a |
| insinto /usr/include/hmmer |
| doins *.h |
| |
| cd ../squid |
| dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate |
| dolib libsquid.a |
| insinto /usr/include/hmmer |
| doins *.h |
| |
| cd .. |
| dodoc NOTES |
| newdoc 00README README |
| insinto /usr/share/doc/${PF} |
| doins Userguide.pdf |
| } |
| |
| src_test() { |
| make check |
| } |