| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| PYTHON_COMPAT=( python2_7 ) |
| PYTHON_REQ_USE="tk" |
| |
| inherit distutils-r1 eutils fdo-mime flag-o-matic versionator |
| |
| DESCRIPTION="A Python-extensible molecular graphics system" |
| HOMEPAGE="http://www.pymol.org/" |
| SRC_URI=" |
| https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz |
| https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz |
| " |
| # mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 |
| # git archive -v --prefix=${P}/ master -o ${P}.tar.xz |
| |
| LICENSE="PSF-2.2" |
| SLOT="0" |
| KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
| IUSE="web" |
| |
| DEPEND=" |
| dev-python/numpy[${PYTHON_USEDEP}] |
| dev-python/pyopengl[${PYTHON_USEDEP}] |
| media-libs/freeglut |
| media-libs/freetype:2 |
| media-libs/glew:0= |
| media-libs/libpng:0= |
| media-video/mpeg-tools |
| sys-libs/zlib |
| virtual/python-pmw[${PYTHON_USEDEP}] |
| !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
| web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
| RDEPEND="${DEPEND}" |
| |
| S="${WORKDIR}"/${P}/${PN} |
| |
| python_prepare_all() { |
| sed \ |
| -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
| -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
| -e "/import/s:argparse:argparseX:g" \ |
| -i setup.py || die |
| |
| sed \ |
| -e "s:/opt/local:${EPREFIX}/usr:g" \ |
| -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
| -i setup.py || die |
| |
| append-cxxflags -std=c++0x |
| |
| distutils-r1_python_prepare_all |
| } |
| |
| python_install() { |
| distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" |
| |
| sed \ |
| -e '1d' \ |
| -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
| -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
| -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
| -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
| } |
| |
| python_install_all() { |
| distutils-r1_python_install_all |
| |
| sed \ |
| -e '1i#!/usr/bin/env python' \ |
| "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
| |
| python_foreach_impl python_doscript "${T}"/${PN} |
| |
| # These environment variables should not go in the wrapper script, or else |
| # it will be impossible to use the PyMOL libraries from Python. |
| cat >> "${T}"/20pymol <<- EOF |
| PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
| PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
| PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
| EOF |
| |
| doenvd "${T}"/20pymol |
| |
| newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png |
| make_desktop_entry ${PN} PyMol ${PN} \ |
| "Graphics;Education;Science;Chemistry;" \ |
| "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
| |
| if ! use web; then |
| rm -rf "${D}/$(python_get_sitedir)/web" || die |
| fi |
| |
| rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
| } |
| |
| pkg_postinst() { |
| fdo-mime_desktop_database_update |
| fdo-mime_mime_database_update |
| optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
| } |
| |
| pkg_postrm() { |
| fdo-mime_desktop_database_update |
| fdo-mime_mime_database_update |
| } |