| # Copyright 1999-2013 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils toolchain-funcs |
| |
| DESCRIPTION="An ultrafast memory-efficient short read aligner" |
| HOMEPAGE="http://bowtie-bio.sourceforge.net/" |
| SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" |
| |
| LICENSE="Artistic" |
| SLOT="0" |
| IUSE="" |
| KEYWORDS="~amd64 ~x86 ~x64-macos" |
| |
| DEPEND="app-arch/unzip" |
| RDEPEND="" |
| |
| src_compile() { |
| unset CFLAGS |
| emake \ |
| CC="$(tc-getCC)" \ |
| CPP="$(tc-getCXX)" \ |
| CXX="$(tc-getCXX)" \ |
| EXTRA_FLAGS="${LDFLAGS}" \ |
| RELEASE_FLAGS="${CXXFLAGS}" |
| } |
| |
| src_install() { |
| dobin bowtie bowtie-* |
| exeinto /usr/share/${PN}/scripts |
| doexe scripts/* |
| |
| insinto /usr/share/${PN} |
| doins -r genomes indexes |
| |
| newman MANUAL bowtie.1 |
| dodoc AUTHORS NEWS TUTORIAL doc/README |
| dohtml doc/{manual.html,style.css} |
| } |
