| # Copyright 1999-2012 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI="4" |
| |
| inherit eutils toolchain-funcs |
| |
| DESCRIPTION="Automated de novo identification of repeat families from genomic sequences" |
| HOMEPAGE="http://selab.janelia.org/recon.html http://www.repeatmasker.org/RepeatModeler.html" |
| SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| IUSE="examples" |
| KEYWORDS="~amd64 ~x86" |
| |
| S="${WORKDIR}/RECON${PV}" |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${PV}-buffer-overflow.patch \ |
| "${FILESDIR}"/${P}-respect.patch |
| sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die |
| tc-export CC |
| } |
| |
| src_compile() { |
| emake -C src |
| } |
| |
| src_install() { |
| dobin scripts/* |
| exeinto /usr/libexec/${PN} |
| doexe src/{edgeredef,eledef,eleredef,famdef,imagespread} |
| dodoc 00README |
| insinto /usr/share/${PN} |
| use examples && doins -r Demos |
| } |
