| configure.ac | 49 +++++++------------------------------------------ |
| src/Makefile.am | 7 +++---- |
| 2 files changed, 10 insertions(+), 46 deletions(-) |
| |
| diff --git a/configure.ac b/configure.ac |
| index f5a4ecf..bbe0743 100644 |
| --- a/configure.ac |
| +++ b/configure.ac |
| @@ -649,33 +649,6 @@ AS_CASE([${host_os}], |
| |
| |
| |
| -dnl PCRE library definitions - see the MAJOR and MINOR values |
| -dnl to see which version's configure.in these lines come from |
| - |
| -dnl Provide the current PCRE version information. Do not use numbers |
| -dnl with leading zeros for the minor version, as they end up in a C |
| -dnl macro, and may be treated as octal constants. Stick to single |
| -dnl digits for minor numbers less than 10. There are unlikely to be |
| -dnl that many releases anyway. |
| - |
| -PCRE_MAJOR="7" |
| -PCRE_MINOR="9" |
| -PCRE_DATE="11-Apr-2009" |
| -PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}" |
| - |
| -dnl Default values for miscellaneous macros |
| - |
| -POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10" |
| - |
| -dnl Provide versioning information for libtool shared libraries that |
| -dnl are built by default on Unix systems. |
| - |
| -PCRE_LIB_VERSION="0:1:0" |
| -PCRE_POSIXLIB_VERSION="0:0:0" |
| - |
| - |
| - |
| - |
| dnl FIXME: This does no longer seem required with Autoconf 2.67? |
| dnl Intel MacOSX 10.6 puts X11 in a non-standard place |
| dnl AS_IF([test "x${with_x}" != "xno"], |
| @@ -751,21 +724,6 @@ AX_LIB_POSTGRESQL |
| |
| |
| |
| -dnl "Export" these variables for PCRE |
| - |
| -AC_SUBST([HAVE_MEMMOVE]) |
| -AC_SUBST([HAVE_STRERROR]) |
| -AC_SUBST([PCRE_MAJOR]) |
| -AC_SUBST([PCRE_MINOR]) |
| -AC_SUBST([PCRE_DATE]) |
| -AC_SUBST([PCRE_VERSION]) |
| -AC_SUBST([PCRE_LIB_VERSION]) |
| -AC_SUBST([PCRE_POSIXLIB_VERSION]) |
| -AC_SUBST([POSIX_MALLOC_THRESHOLD]) |
| - |
| - |
| - |
| - |
| dnl Test if --enable-localforce given |
| locallink="no" |
| embprefix="/usr/local" |
| @@ -888,6 +846,13 @@ AC_ARG_ENABLE([systemlibs], |
| AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) |
| |
| |
| +AS_IF([test "x${enable_systemlibs}" = "xyes"], |
| +[ |
| +dnl using system libraries |
| + PKG_CHECK_MODULES([PLPLOT], [plplotd], |
| + [],[PKG_CHECK_MODULES([PLPLOT], [plplot])] |
| + ) |
| +]) |
| |
| |
| # Enable the purify tool: --enable-purify, sets CC and LIBTOOL |
| diff --git a/src/Makefile.am b/src/Makefile.am |
| index 1f5b756..e178914 100644 |
| --- a/src/Makefile.am |
| +++ b/src/Makefile.am |
| @@ -32,9 +32,7 @@ AM_CPPFLAGS = -I../H -I../../../nucleus -I../../../ajax/pcre \ |
| -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ |
| -I../../../ajax/acd -I../../../plplot |
| else |
| -AM_CPPFLAGS = -I../H -I${embprefix}/include -I${embprefix}/include/eplplot \ |
| - $(NLINCLUDES) \ |
| - -I${embprefix}/include/epcre |
| +AM_CPPFLAGS = -I$(top_srcdir)/H -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS) |
| endif |
| |
| if ISSHARED |
| @@ -87,6 +85,7 @@ LINKFLAGS = $(VERS_INF) |
| endif |
| |
| liboviennarna_la_LDFLAGS = $(LINKFLAGS) |
| +liboviennarna_la_LIBADD = -lajax |
| |
| ovrnaalifold_SOURCES = vrnaalifold.c |
| ovrnaalifoldpf_SOURCES = vrnaalifoldpf.c |
| @@ -119,5 +118,5 @@ LDADD = liboviennarna.la \ |
| $(XLIB) |
| else |
| LDADD = liboviennarna.la -L${embprefix}/lib -lnucleus -lacd -lajaxdb \ |
| - -lensembl -lajaxg -lajax -lepcre $(NLADD) -leplplot $(XLIB) |
| + -lensembl -lajaxg -lajax $(NLADD) $(XLIB) |
| endif |
