| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| inherit eutils |
| |
| DESCRIPTION="Sequence analysis using profile hidden Markov models" |
| HOMEPAGE="http://hmmer.janelia.org/" |
| SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${PV}/${P}.tar.gz" |
| |
| LICENSE="GPL-3" |
| SLOT="0" |
| IUSE="+cpu_flags_x86_sse mpi +threads gsl static-libs" |
| KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos" |
| |
| DEPEND=" |
| mpi? ( virtual/mpi ) |
| gsl? ( >=sci-libs/gsl-1.12 )" |
| RDEPEND="${DEPEND}" |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${P}-fix_tests.patch \ |
| "${FILESDIR}"/${P}-perl-5.16-2.patch |
| } |
| |
| src_configure() { |
| econf \ |
| $(use_enable cpu_flags_x86_sse sse) \ |
| $(use_enable mpi) \ |
| $(use_enable threads) \ |
| $(use_with gsl) |
| } |
| |
| src_install() { |
| default |
| |
| use static-libs && dolib.a src/libhmmer.a easel/libeasel.a |
| |
| insinto /usr/share/${PN} |
| doins -r tutorial |
| dodoc Userguide.pdf |
| } |
