| # Copyright 1999-2013 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI="4" |
| |
| inherit autotools eutils toolchain-funcs |
| |
| DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" |
| HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" |
| SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" |
| |
| LICENSE="abyss" |
| SLOT="0" |
| IUSE="+mpi openmp" |
| KEYWORDS="amd64 x86" |
| |
| DEPEND=" |
| dev-cpp/sparsehash |
| mpi? ( virtual/mpi )" |
| RDEPEND="${DEPEND}" |
| |
| # todo: --enable-maxk=N configure option |
| # todo: fix automagic mpi toggling |
| |
| src_prepare() { |
| tc-export AR |
| epatch \ |
| "${FILESDIR}"/${P}-gcc-4.7.patch \ |
| "${FILESDIR}"/${P}-ac_prog_ar.patch |
| |
| sed -i -e "s/-Werror//" configure.ac || die #365195 |
| sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die |
| eautoreconf |
| } |
| |
| src_configure() { |
| econf \ |
| --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
| $(use_enable openmp) |
| } |
