| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| PYTHON_COMPAT=( python2_7 ) |
| |
| inherit fortran-2 python-single-r1 toolchain-funcs |
| |
| MY_PN="pdbTools" |
| |
| DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files" |
| HOMEPAGE="https://github.com/harmslab/pdbtools" |
| SRC_URI="https://${PN}.googlecode.com/files/${MY_PN}_${PV}.tar.gz" |
| |
| SLOT="0" |
| LICENSE="GPL-3" |
| KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
| IUSE="" |
| |
| REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
| |
| RDEPEND="${PYTHON_DEPS}" |
| DEPEND="${RDEPEND}" |
| |
| S="${WORKDIR}"/${MY_PN}_${PV} |
| |
| pkg_setup() { |
| python-single-r1_pkg_setup |
| fortran-2_pkg_setup |
| } |
| |
| src_prepare() { |
| sed \ |
| -e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \ |
| -i pdb_sasa.py || die |
| sed \ |
| -e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \ |
| -i pdb_satk.py || die |
| sed \ |
| -e 's:> %:>%:g' \ |
| -i pdb_seq.py || die |
| |
| sed \ |
| -e "/import/s:helper:${PN/-/_}.helper:g" \ |
| -i *.py || die |
| } |
| |
| src_compile() { |
| mkdir bin |
| cd satk |
| for i in *.f; do |
| einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}" |
| $(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die |
| $(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die |
| sed \ |
| -e "s:${i/.f}.out:${i/.f}:g" \ |
| -i ../pdb_satk.py || die |
| done |
| } |
| |
| src_install() { |
| local script |
| insinto /usr/share/${PN} |
| doins -r pdb_data/peptides |
| rm -rf pdb_data/peptides || die |
| |
| python_domodule pdb_data |
| |
| python_moduleinto ${PN/-/_} |
| python_domodule helper *.py |
| |
| for i in pdb_*.py; do |
| cat > ${i/.py} <<- EOF |
| #!${EPREFIX}/bin/bash |
| ${PYTHON} -O "$(python_get_sitedir)/${PN/-/_}/${i}" \$@ |
| EOF |
| dobin ${i/.py} |
| done |
| |
| dobin bin/* |
| dodoc README |
| } |