| # Copyright 1999-2012 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| AUTOTOOLS_AUTORECONF=yes |
| |
| inherit autotools-utils |
| |
| DESCRIPTION="A fast splice junction mapper for RNA-Seq reads" |
| HOMEPAGE="http://tophat.cbcb.umd.edu/" |
| SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz" |
| |
| LICENSE="Artistic" |
| SLOT="0" |
| KEYWORDS="~amd64 ~x86" |
| IUSE="+bam debug" |
| |
| DEPEND=" |
| dev-libs/boost |
| bam? ( sci-biology/samtools )" |
| RDEPEND="${DEPEND} |
| sci-biology/bowtie" |
| |
| PATCHES=( "${FILESDIR}"/${P}-flags.patch ) |
| |
| src_configure() { |
| local myeconfargs=( $(use_enable debug) ) |
| autotools-utils_src_configure |
| } |
