| # Copyright 1999-2012 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=4 |
| |
| inherit eutils toolchain-funcs |
| |
| DESCRIPTION="Prototype ncRNA genefinder" |
| HOMEPAGE="http://selab.janelia.org/software.html" |
| SRC_URI="mirror://gentoo/${P}.tar.bz2" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| KEYWORDS="amd64 ~ppc x86" |
| IUSE="" |
| |
| RDEPEND=" |
| dev-lang/perl |
| sci-biology/hmmer" |
| DEPEND="${RDEPEND}" |
| |
| src_prepare() { |
| epatch \ |
| "${FILESDIR}"/${P}-glibc-2.10.patch \ |
| "${FILESDIR}"/${P}-ldflags.patch |
| sed \ |
| -e "s:^CC.*:CC = $(tc-getCC):" \ |
| -e "/^AR/s:ar:$(tc-getAR):g" \ |
| -e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \ |
| -e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \ |
| -i {src,squid,squid02}/Makefile || die |
| rm -v squid*/*.a |
| } |
| |
| src_compile() { |
| local dir |
| for dir in squid squid02 src; do |
| emake -C ${dir} |
| done |
| } |
| |
| src_install () { |
| dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/* |
| |
| newdoc 00README README |
| insinto /usr/share/doc/${PF} |
| doins documentation/* |
| |
| insinto /usr/share/${PN}/data |
| doins lib/* |
| insinto /usr/share/${PN}/demos |
| doins Demos/* |
| |
| # Sets the path to the QRNA data files. |
| doenvd "${FILESDIR}"/26qrna |
| } |