| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| PYTHON_COMPAT=( python2_7 ) |
| |
| inherit cmake-utils flag-o-matic python-single-r1 |
| |
| DESCRIPTION="C++ Sequence Analysis Library" |
| HOMEPAGE="http://www.seqan.de/" |
| SRC_URI="http://ftp.seqan.de/releases/${P}.zip" |
| |
| SLOT="0" |
| LICENSE="BSD GPL-3" |
| KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
| IUSE="" |
| |
| REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
| |
| RDEPEND="${PYTHON_DEPS} |
| ~sci-biology/samtools-0.1.19" |
| DEPEND="${RDEPEND}" |
| |
| S="${WORKDIR}"/${P}/cmake |
| |
| pkg_setup() { |
| if [[ ${MERGE_TYPE} != binary ]]; then |
| [[ $(gcc-major-version) -gt 4 ]] || \ |
| ( [[ $(gcc-major-version) -eq 4 && $(gcc-minor-version) -gt 8 ]] ) \ |
| && die "Sorry, but gcc 4.9 or higher is unsupported" |
| fi |
| } |
| |
| src_prepare() { |
| append-cppflags -I"${EPREFIX}/usr/include/bam" |
| rm -rf "${S}"/../lib/samtools || die |
| |
| sed \ |
| -e "s:docs:docs/.:g" \ |
| -e "/DESTINATION/s:seqan:doc/${PF}/html:g" \ |
| -i CMakeLists.txt || die |
| |
| sed \ |
| -e "/DESTINATION/s:bin):share/${PN}):g" \ |
| -i apps/CMakeLists.txt || die |
| |
| cmake-utils_src_prepare |
| } |
