| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils toolchain-funcs |
| |
| DESCRIPTION="Whole genome association analysis toolset" |
| HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/" |
| SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> ${P}.zip" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| KEYWORDS="~amd64 ~x86" |
| IUSE="" |
| |
| DEPEND=" |
| app-arch/unzip |
| virtual/pkgconfig" |
| RDEPEND=" |
| sys-libs/zlib |
| virtual/cblas |
| virtual/lapack |
| " |
| |
| S="${WORKDIR}/" |
| |
| # Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. |
| # Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. |
| |
| src_prepare() { |
| sed \ |
| -e 's:zlib-1.2.8/zlib.h:zlib.h:g' \ |
| -i *.{c,h} || die |
| |
| sed \ |
| -e 's:g++:$(CXX):g' \ |
| -e 's:gcc:$(CC):g' \ |
| -e 's:gfortran:$(FC):g' \ |
| -i Makefile || die |
| tc-export PKG_CONFIG |
| } |
| |
| src_compile() { |
| emake \ |
| CXX=$(tc-getCXX) \ |
| CFLAGS="${CFLAGS}" \ |
| ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \ |
| BLASFLAGS="$($(tc-getPKG_CONFIG) --libs lapack cblas)" |
| } |
| |
| src_install() { |
| newbin plink p-link |
| } |
