| # Copyright 1999-2011 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI="3" |
| |
| inherit eutils flag-o-matic |
| |
| DESCRIPTION="A rapid whole genome aligner" |
| HOMEPAGE="http://mummer.sourceforge.net/" |
| SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" |
| |
| LICENSE="Artistic" |
| SLOT="0" |
| IUSE="doc" |
| KEYWORDS="amd64 x86" |
| |
| DEPEND="" |
| RDEPEND="app-shells/tcsh" |
| |
| S="${WORKDIR}/MUMmer${PV}" |
| |
| src_prepare() { |
| use amd64 && append-flags -DSIXTYFOURBITS |
| |
| epatch \ |
| "${FILESDIR}"/${PV}-prll.patch \ |
| "${FILESDIR}"/${PV}-ldflags.patch |
| |
| sed \ |
| -e '/^CFLAGS/d' \ |
| -e '/^CXXFLAGS/d' \ |
| -e '/^LDFLAGS/d' \ |
| -i Makefile || die |
| } |
| |
| src_compile() { |
| emake || die |
| |
| sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| -e 's|\(set bindir = \).*|\1/usr/bin|' \ |
| -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ |
| -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die |
| mv annotate mummer-annotate || die |
| sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die |
| } |
| |
| src_install() { |
| dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die |
| |
| insinto /usr/share/${PN}/scripts |
| doins scripts/{*.awk,*.csh,*.pl} || die |
| insinto /usr/share/${PN}/lib |
| doins scripts/Foundation.pm || die |
| |
| dodoc ACKNOWLEDGEMENTS ChangeLog README || die |
| insinto /usr/share/doc/${PF} |
| if use doc; then |
| doins -r docs || die |
| fi |
| } |
