| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit cmake-utils |
| |
| DESCRIPTION="Fast inference of approximately-maximum-likelihood phylogenetic trees" |
| HOMEPAGE="http://www.microbesonline.org/fasttree/" |
| SRC_URI=" |
| http://www.microbesonline.org/fasttree/FastTree-${PV}.c |
| http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-${PV}.c |
| http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-${PV}.tar.gz |
| " |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| KEYWORDS="amd64 x86" |
| IUSE="double-precision openmp cpu_flags_x86_sse3" |
| |
| REQUIRED_USE="?? ( double-precision cpu_flags_x86_sse3 )" |
| |
| DOCS=( README ) |
| |
| PATCHES=( "${FILESDIR}"/${P}-format-security.patch ) |
| |
| src_unpack() { |
| mkdir "${S}" || die |
| cd "${S}" || die |
| unpack ${A} |
| cp "${DISTDIR}"/{FastTreeUPGMA-${PV}.c,FastTree-${PV}.c} . || die |
| } |
| |
| src_prepare() { |
| cp "${FILESDIR}"/CMakeLists.txt . || die |
| cmake-utils_src_prepare |
| } |
| |
| src_configure() { |
| local mycmakeargs=( |
| -DVERSION="${PV}" |
| $(cmake-utils_use_has cpu_flags_x86_sse3 sse3) |
| $(cmake-utils_use_use openmp) |
| $(cmake-utils_use_use double-precision double) |
| ) |
| cmake-utils_src_configure |
| } |
