| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator |
| |
| MY_PV="$(replace_version_separator 2 .r)" |
| MY_P="T-COFFEE_distribution_Version_${MY_PV}" |
| |
| DESCRIPTION="A multiple sequence alignment package" |
| HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" |
| SRC_URI="http://www.tcoffee.org/Packages/Stable/Version_${MY_PV}/${MY_P}.tar.gz" |
| |
| LICENSE="GPL-2" |
| SLOT="0" |
| KEYWORDS="amd64 ppc ~ppc64 x86 ~amd64-linux ~x86-linux" |
| IUSE="examples" |
| |
| RDEPEND=" |
| sci-biology/clustalw |
| sci-chemistry/tm-align" |
| DEPEND="" |
| |
| S="${WORKDIR}/${MY_P}" |
| |
| die_compile() { |
| echo |
| eerror "If you experience an internal compiler error (consult the above" |
| eerror "messages), try compiling t-coffee using very modest compiler flags." |
| eerror "See bug #114745 on the Gentoo Bugzilla for more details." |
| die "Compilation failed" |
| } |
| |
| src_prepare() { |
| epatch "${FILESDIR}"/${P}-flags.patch |
| } |
| |
| src_compile() { |
| [[ $(gcc-version) == "3.4" ]] || \ |
| [[ $(gcc-version) == "4.1" ]] && \ |
| append-flags -fno-unit-at-a-time |
| emake \ |
| CC="$(tc-getCC)" \ |
| CFLAGS="${CFLAGS}" \ |
| -C t_coffee_source t_coffee |
| } |
| |
| src_install() { |
| dobin t_coffee_source/t_coffee |
| |
| if use examples; then |
| insinto /usr/share/${PN} |
| doins -r example |
| fi |
| } |
