| # Copyright 1999-2014 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils prefix toolchain-funcs versionator |
| |
| #MY_P="${PN}$(delete_all_version_separators)" |
| MY_P="${PN}${PV}" |
| |
| DESCRIPTION="Protein Secondary Structure Prediction" |
| HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" |
| SRC_URI=" |
| http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz |
| test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )" |
| |
| LICENSE="psipred" |
| SLOT="0" |
| KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
| IUSE="test" |
| |
| RDEPEND=" |
| app-shells/tcsh |
| sci-biology/ncbi-tools |
| || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )" |
| DEPEND="" |
| |
| S="${WORKDIR}"/${PN} |
| |
| src_prepare() { |
| rm -f bin/* |
| epatch \ |
| "${FILESDIR}"/3.1-Makefile.patch \ |
| "${FILESDIR}"/3.1-path.patch \ |
| "${FILESDIR}"/3.2-fgets.patch |
| eprefixify runpsipred* |
| emake -C src clean |
| } |
| |
| src_compile() { |
| emake -C src CC=$(tc-getCC) |
| } |
| |
| src_install() { |
| emake -C src DESTDIR="${D}" install |
| dobin runpsipred* bin/* BLAST+/runpsipred* |
| insinto /usr/share/${PN} |
| doins -r data |
| dodoc README |
| } |
| |
| pkg_postinst() { |
| elog "Please use the update_blastdb.pl in order to" |
| elog "maintain your own local blastdb" |
| } |
