| # Copyright 1999-2014 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit cmake-utils |
| |
| DESCRIPTION="Streaming RNA-Seq Analysis" |
| HOMEPAGE="http://bio.math.berkeley.edu/eXpress/" |
| SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz" |
| |
| LICENSE="Artistic" |
| SLOT="0" |
| KEYWORDS="~amd64 ~x86" |
| |
| DEPEND=" |
| >=dev-libs/boost-1.52.0:= |
| sys-libs/zlib |
| sci-biology/bamtools" |
| RDEPEND="${DEPEND}" |
| |
| S="${WORKDIR}/${P}-src" |
| |
| CMAKE_USE_DIR="${S}/src" |
| |
| src_prepare() { |
| sed \ |
| -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \ |
| -e '1 a find_package(Boost 1.52 COMPONENTS filesystem program_options system thread)' \ |
| -e '1 a find_package(ZLIB)' \ |
| -e '/add_executable/ a include_directories("/usr/include/bamtools")' \ |
| -i src/CMakeLists.txt || die |
| |
| cmake-utils_src_prepare |
| } |
