| # Copyright 1999-2014 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI="5" |
| |
| inherit perl-module |
| |
| DESCRIPTION="Do It Yourself Annotation, a collection of tools and libraries for sequence assembly and annotation" |
| HOMEPAGE="http://gmod.org/wiki/Diya" |
| SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz" |
| |
| LICENSE="GPL-3" |
| SLOT="0" |
| IUSE="-minimal" |
| KEYWORDS="~amd64 ~x86" |
| |
| DEPEND="sci-biology/bioperl |
| dev-perl/Data-Utilities |
| dev-perl/XML-Simple" |
| RDEPEND="${DEPEND} |
| !minimal? ( |
| sci-biology/mummer |
| sci-biology/glimmer |
| sci-biology/trnascan-se |
| sci-biology/infernal )" |
| |
| # see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++ |
| # * rfamscan.pl v0.1 (http://www.sanger.ac.uk/Users/sgj/code/) |
| # * UniRef50 (http://www.ebi.ac.uk/uniref/) |
| # * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/) |
| # The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/. |
| |
| S="${WORKDIR}/diya-${PV/_/-}" |
| |
| SRC_TEST=do |
| |
| src_install() { |
| mydoc="INSTALL README docs/diya.html" |
| perl-module_src_install |
| insinto /usr/share/${PN} |
| doins -r diya.conf docs examples scripts |
| } |
