| # Copyright 1999-2015 Gentoo Foundation |
| # Distributed under the terms of the GNU General Public License v2 |
| # $Id$ |
| |
| EAPI=5 |
| |
| inherit eutils toolchain-funcs |
| |
| DESCRIPTION="Popular short read aligner for Next-generation sequencing data" |
| HOMEPAGE="http://bowtie-bio.sourceforge.net/bowtie2/" |
| SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip" |
| |
| LICENSE="GPL-3" |
| SLOT="2" |
| KEYWORDS="amd64 x86" |
| |
| IUSE="examples cpu_flags_x86_sse2 +tbb" |
| |
| RDEPEND="dev-lang/perl" |
| DEPEND="${RDEPEND} |
| app-arch/unzip |
| tbb? ( dev-cpp/tbb )" |
| |
| S="${WORKDIR}/${PN}2-${PV}" |
| |
| DOCS=( AUTHORS NEWS TUTORIAL ) |
| HTML_DOCS=( doc/{manual.html,style.css} ) |
| |
| pkg_pretend() { |
| if ! use cpu_flags_x86_sse2 ; then |
| eerror "This package requires a CPU supporting the SSE2 instruction set." |
| die "SSE2 support missing" |
| fi |
| } |
| |
| src_compile() { |
| emake \ |
| CC="$(tc-getCC)" \ |
| CPP="$(tc-getCXX)" \ |
| CXX="$(tc-getCXX)" \ |
| CFLAGS="" \ |
| CXXFLAGS="" \ |
| EXTRA_FLAGS="${LDFLAGS}" \ |
| RELEASE_FLAGS="${CXXFLAGS} -msse2" \ |
| WITH_TBB="$(usex tbb 1 0)" |
| } |
| |
| src_install() { |
| dobin ${PN}2 ${PN}2-* |
| |
| exeinto /usr/libexec/${PN}2 |
| doexe scripts/* |
| |
| newman MANUAL ${PN}2.1 |
| einstalldocs |
| |
| if use examples; then |
| insinto /usr/share/${PN}2 |
| doins -r example |
| fi |
| } |
