Suppress deprecation warning for classes from jar files

Classes from jar files that had their comments stripped
may erroneously trigger the deprecation warning because
of missing "@deprecated" doc tag. This change
makes the deprecation warning require that containing
class be in "included" set (this implies not originating
from a classpath jar file).

Test: make -j docs, tested it works with a synthetic
@deprecated javadoc/annotation mismatch
Bug: 32651845

Change-Id: I5db5c509d4c0015ee950a4f093af03c384baed4b
3 files changed